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Structure of Cytosolic Protein of Unknown Function YutE from Bacillus subtilis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.5 298 .075 Tris, 1.5M Ammonium sulfate, 25% glycerol, pH 8.5, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.76 55.11
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.914 α = 90 b = 72.081 β = 115.24 c = 76.552 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC-1 2004-11-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID .97940 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.83 33.6 31170 30664 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.83 1.9 89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.83 33.6 30664 29123 1541 98.36 0.20165 0.19972 0.1994 0.2385 0.2385 RANDOM 24.399
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.75 -0.49 -0.56 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.157 r_dihedral_angle_1_deg 14.884 r_dihedral_angle_3_deg 14.317 r_dihedral_angle_4_deg 13.349 r_scangle_it 3.724 r_scbond_it 2.824 r_mcangle_it 1.328 r_angle_refined_deg 1.318 r_mcbond_it 0.72 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.157 r_dihedral_angle_1_deg 14.884 r_dihedral_angle_3_deg 14.317 r_dihedral_angle_4_deg 13.349 r_scangle_it 3.724 r_scbond_it 2.824 r_mcangle_it 1.328 r_angle_refined_deg 1.318 r_mcbond_it 0.72 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.238 r_nbd_refined 0.205 r_symmetry_vdw_refined 0.164 r_chiral_restr 0.146 r_xyhbond_nbd_refined 0.14 r_bond_refined_d 0.019 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2324 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling