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Crystal structure of HI0827, a hexameric broad specificity acyl-coenzyme A thioesterase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 298 PEG 4000, bicine, calcium acetate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.74 54.81
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 163.676 α = 90 b = 163.676 β = 90 c = 163.676 γ = 90
Symmetry Space Group I 41 3 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2002-03-17 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 210 2002-03-17 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.5545 APS 17-ID 2 SYNCHROTRON APS BEAMLINE 17-ID 1.0720, 1.0723, 1.0543 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 30 98.3 0.075 17 19.8 29132 29132 19
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 83.4 0.65 1.5 3 2433
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 24.68 26684 26684 2123 97.19 0.184 0.184 0.18 0.1849 0.227 0.2298 RANDOM 35.164
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.209 r_dihedral_angle_4_deg 16.104 r_dihedral_angle_3_deg 16.061 r_dihedral_angle_1_deg 5.81 r_scangle_it 3.56 r_scbond_it 2.42 r_angle_refined_deg 1.619 r_mcangle_it 1.452 r_mcbond_it 1.008 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.209 r_dihedral_angle_4_deg 16.104 r_dihedral_angle_3_deg 16.061 r_dihedral_angle_1_deg 5.81 r_scangle_it 3.56 r_scbond_it 2.42 r_angle_refined_deg 1.619 r_mcangle_it 1.452 r_mcbond_it 1.008 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.222 r_nbd_refined 0.217 r_symmetry_hbond_refined 0.18 r_xyhbond_nbd_refined 0.147 r_chiral_restr 0.112 SYMMETRY METAL-ION REFINED ATOMS (A) 0.049 POTENTIAL METAL-ION REFINED ATOMS (A) 0.037 r_bond_refined_d 0.017 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2195 Nucleic Acid Atoms Solvent Atoms 215 Heterogen Atoms 112
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction