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Structure of Hen egg white lysozyme soaked with Cu-cyclam
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 4.5 277 Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2 38.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.906 α = 90 b = 77.906 β = 90 c = 37.762 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 0.97950 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 55.05 99.9 81871 12234 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.84 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 55 2 12234 11619 584 99.8 0.17839 0.17839 0.17565 0.1749 0.23314 0.2321 RANDOM 19.552
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.2 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_4_deg 19.248 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.055 r_scangle_it 3.885 r_scbond_it 2.531 r_mcangle_it 1.633 r_angle_refined_deg 1.577 r_mcbond_it 0.939 r_nbtor_refined 0.297
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.082 r_dihedral_angle_4_deg 19.248 r_dihedral_angle_3_deg 13.273 r_dihedral_angle_1_deg 6.055 r_scangle_it 3.885 r_scbond_it 2.531 r_mcangle_it 1.633 r_angle_refined_deg 1.577 r_mcbond_it 0.939 r_nbtor_refined 0.297 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.217 r_symmetry_hbond_refined 0.164 r_xyhbond_nbd_refined 0.155 r_metal_ion_refined 0.123 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1016 Nucleic Acid Atoms Solvent Atoms 169 Heterogen Atoms 45
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing