1YEZ
Solution structure of the conserved protein from the gene locus MM1357 of Methanosarcina mazei. Northeast Structural Genomics target MaR30.
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_13C-separated_NOESY | 2mM MaR30 U-13C,15N, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O/95% H2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 | |
2 | 3D_15N-separated_NOESY | 2mM MaR30 U-13C,15N, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O/95% H2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 | |
3 | 3D_13C-separated_NOESY | 0.56mM MaR30 U-13C,15N, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 100% D2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 | |
4 | Hi-res CH-HSQC, HcCH-COSY | 0.56mM MaR30 U-13C,15N, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 100% D2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 | |
5 | Hi-res CH-HSQC (stereo V and L Meth.), HNHA | 0.78mM MaR30 U-15N,5% 13C 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O/95% H2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 | |
6 | TR exp. backbone, TOCSYs, HcCH-COSY | 2mM MaR30 U-13C,15N, 0.02% NaN3, 10mM DTT, 5mM CaCl2, 100mM NaCl, 20mM MES | 5% D2O/95% H2O | 100 mM NaCl | 6.5 | atmospheric atm | 293 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 600 |
2 | Bruker | AVANCE | 500 |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 56 |
Conformers Submitted Total Number | 10 |
Representative Model | 1 (lowest target function) |
Additional NMR Experimental Information | |
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Details | CS assign.: Backbone AutoAssign, sidechain HcCH-COSY and TOCSYs. AutoStructure for noesy assign. Hyper Dihedral, Dyana, Xplor(nih), and CNS force-field for simulated annealing and RPF score calculation. |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | collection | VNMR | 6.1C | Varian |
2 | collection | XwinNMR | 3.5 | Bruker Biospin |
3 | processing | NMRPipe | 2.1 | Delaglio |
4 | data analysis | Sparky | 3.91 | Goddard |
5 | data analysis | AutoAssign | 1.14 | Zimmerman,Moseley,Montelione |
6 | refinement | AutoStructure | 2.1.0 | Huang,Montelione |