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Conserved hypothetical protein Pfu-1647980-001 from Pyrococcus furiosus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 8.9 291 0.1M TRIS-HCl/NaOH, 0.5M ammonium sulfate, pH 8.9, modified microbatch, temperature 291K
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.448 α = 90 b = 61.448 β = 90 c = 129.084 γ = 120
Symmetry Space Group P 32 1 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.9793 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 0.08 17709
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.97 19.4 0.477
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAS THROUGHOUT 2.3 29.89 12041 630 99.87 0.20764 0.20586 0.2155 0.24274 0.2526 RANDOM 38.163
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.05 0.02 0.05 -0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.136 r_dihedral_angle_4_deg 15.657 r_dihedral_angle_3_deg 15.344 r_dihedral_angle_1_deg 6.78 r_mcangle_it 4.059 r_scangle_it 3.559 r_mcbond_it 3.043 r_scbond_it 2.482 r_angle_refined_deg 1.45 r_angle_other_deg 0.889
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.136 r_dihedral_angle_4_deg 15.657 r_dihedral_angle_3_deg 15.344 r_dihedral_angle_1_deg 6.78 r_mcangle_it 4.059 r_scangle_it 3.559 r_mcbond_it 3.043 r_scbond_it 2.482 r_angle_refined_deg 1.45 r_angle_other_deg 0.889 r_mcbond_other 0.708 r_symmetry_vdw_other 0.22 r_nbd_refined 0.2 r_nbd_other 0.18 r_symmetry_vdw_refined 0.177 r_nbtor_refined 0.174 r_xyhbond_nbd_refined 0.148 r_symmetry_hbond_refined 0.118 r_chiral_restr 0.096 r_nbtor_other 0.083 r_bond_refined_d 0.015 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1279 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 6
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection