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Crystal Structure of Protein of Unknown Function AF1548
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2M (NH4)2SO4, 15% PEG 3350, 2% PEG 400, pH 7, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.5 65
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 124.225 α = 90 b = 124.225 β = 90 c = 62.982 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2004-10-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9791 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 50 46454 46443 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.92 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.85 50 23669 23669 1266 99.93 0.20321 0.20163 0.2014 0.2329 0.2326 RANDOM 24.582
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.21 0.61 1.21 -1.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.884 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 13.019 r_scangle_it 3.963 r_scbond_it 2.607 r_mcangle_it 1.657 r_angle_refined_deg 1.461 r_mcbond_it 1.024 r_symmetry_vdw_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.884 r_dihedral_angle_4_deg 17.83 r_dihedral_angle_3_deg 14.398 r_dihedral_angle_1_deg 13.019 r_scangle_it 3.963 r_scbond_it 2.607 r_mcangle_it 1.657 r_angle_refined_deg 1.461 r_mcbond_it 1.024 r_symmetry_vdw_refined 0.331 r_nbtor_refined 0.312 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.203 r_xyhbond_nbd_refined 0.168 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1469 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing