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Catalytic Domain Of Human Phosphodiesterase 4D In Complex With 3,5-dimethyl-1H-pyrazole-4-carboxylic acid ethyl ester
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 288 PEG3350, ethylene glycol, isopropanol, glycerol and DTT, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 2.44 49.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.469 α = 90 b = 79.009 β = 90 c = 164.141 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 81.65 97.89 0.048 9.4 6.8 144200 144200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.436 98 0.588 2.6 4.5 9086
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.4 81.65 144200 144200 7624 97.89 0.17572 0.17572 0.17521 0.1753 0.18522 0.1833 RANDOM 10.388
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.92 0.03 -0.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.66 r_scangle_it 2.089 r_scbond_it 1.25 r_angle_refined_deg 1.065 r_angle_other_deg 0.788 r_mcangle_it 0.684 r_mcbond_it 0.334 r_symmetry_vdw_other 0.28 r_nbd_other 0.223 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 2.66 r_scangle_it 2.089 r_scbond_it 1.25 r_angle_refined_deg 1.065 r_angle_other_deg 0.788 r_mcangle_it 0.684 r_mcbond_it 0.334 r_symmetry_vdw_other 0.28 r_nbd_other 0.223 r_nbd_refined 0.212 r_symmetry_hbond_refined 0.139 r_symmetry_vdw_refined 0.108 r_xyhbond_nbd_refined 0.107 r_nbtor_other 0.08 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_gen_planes_other 0.004 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5253 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 104
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing