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Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 291 30% v/v PEG 2000 MME, 0.2M ammonium sulfate, 0.1M ammonium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.71 54.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 98.073 α = 90 b = 111.335 β = 90 c = 125.984 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 300 mm CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.969 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.25 30 99.9 0.061 64843
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.25 2.33 99.4 0.358
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.261 83.333 64776 2015 99.415 0.201 0.20098 0.1995 0.2085 0.2462 0.2531 thin shells 30.862
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.148 -0.367 0.218
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.553 r_dihedral_angle_4_deg 19.792 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 5.903 r_scangle_it 4.076 r_mcangle_it 3.83 r_angle_other_deg 3.718 r_scbond_it 2.782 r_mcbond_it 2.554 r_mcangle_other 2.49
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.553 r_dihedral_angle_4_deg 19.792 r_dihedral_angle_3_deg 14.472 r_dihedral_angle_1_deg 5.903 r_scangle_it 4.076 r_mcangle_it 3.83 r_angle_other_deg 3.718 r_scbond_it 2.782 r_mcbond_it 2.554 r_mcangle_other 2.49 r_scangle_other 2.178 r_angle_refined_deg 1.461 r_symmetry_vdw_other 0.308 r_symmetry_hbond_refined 0.227 r_nbd_other 0.219 r_nbd_refined 0.208 r_nbtor_refined 0.174 r_symmetry_vdw_refined 0.166 r_xyhbond_nbd_refined 0.161 r_nbtor_other 0.105 r_chiral_restr 0.083 r_bond_refined_d 0.018 r_gen_planes_other 0.008 r_gen_planes_refined 0.006 r_bond_other_d r_mcbond_other r_scbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7728 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 25
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing RESOLVE phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection ARP/wARP model building MolProbity model building