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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With (R)-Rolipram
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate and lithium sulfate, pH 10.0, VAPOR DIFFUSION, SITTING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.46 50.08
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.67 α = 90 b = 94.633 β = 90 c = 106.432 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2004-07-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 70.71 99.15 0.096 4.7 4.1 34006 34006
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.462 99.2 0.759 3.7 2591
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.4 70.71 34006 34006 1792 99.15 0.2454 0.24264 0.2434 0.29805 0.2949 RANDOM 22.28
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.59 -1.87 5.46
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.999 r_scangle_it 3.714 r_scbond_it 2.491 r_angle_refined_deg 2.04 r_mcangle_it 1.448 r_angle_other_deg 1.055 r_mcbond_it 0.832 r_symmetry_vdw_refined 0.411 r_symmetry_vdw_other 0.256 r_symmetry_hbond_refined 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.999 r_scangle_it 3.714 r_scbond_it 2.491 r_angle_refined_deg 2.04 r_mcangle_it 1.448 r_angle_other_deg 1.055 r_mcbond_it 0.832 r_symmetry_vdw_refined 0.411 r_symmetry_vdw_other 0.256 r_symmetry_hbond_refined 0.235 r_nbd_refined 0.233 r_nbd_other 0.233 r_xyhbond_nbd_refined 0.176 r_metal_ion_refined 0.162 r_chiral_restr 0.119 r_nbtor_other 0.096 r_bond_refined_d 0.025 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5226 Nucleic Acid Atoms Solvent Atoms 61 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing