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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Roflumilast
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate and lithium sulfate , pH 10, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.48 50.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.316 α = 90 b = 94.1 β = 90 c = 108.026 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2004-06-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 70.71 90.91 0.067 7.9 4.7 35524 35524
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.36 94 0.568 2.3 4.4 2803
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.3 70.71 35524 35524 1874 90.91 0.20986 0.20797 0.2105 0.24556 0.2478 RANDOM 32.301
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.25 1.71 -0.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.034 r_scangle_it 2.967 r_scbond_it 1.776 r_angle_refined_deg 1.394 r_mcangle_it 1.139 r_angle_other_deg 1.048 r_mcbond_it 0.581 r_symmetry_vdw_other 0.32 r_nbd_other 0.217 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.034 r_scangle_it 2.967 r_scbond_it 1.776 r_angle_refined_deg 1.394 r_mcangle_it 1.139 r_angle_other_deg 1.048 r_mcbond_it 0.581 r_symmetry_vdw_other 0.32 r_nbd_other 0.217 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.15 r_symmetry_hbond_refined 0.126 r_nbtor_other 0.099 r_chiral_restr 0.089 r_metal_ion_refined 0.072 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5307 Nucleic Acid Atoms Solvent Atoms 79 Heterogen Atoms 56
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing