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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With Cilomilast
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate and lithium sulfate , pH 10, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.44 49.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.274 α = 90 b = 94.259 β = 90 c = 106.078 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2003-08-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.19 70.71 92.75 0.072 6.6 4.6 41167 41167
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.19 2.247 95.9 0.666 1.1 4.5 3048
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.19 70.71 41167 41167 2198 92.75 0.23493 0.23493 0.23249 0.2391 0.28225 0.2878 RANDOM 12.326
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -5.78 -1.29 7.07
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.916 r_dihedral_angle_1_deg 3.664 r_scbond_it 2.628 r_angle_refined_deg 1.994 r_mcangle_it 1.622 r_angle_other_deg 1.039 r_mcbond_it 0.953 r_symmetry_vdw_other 0.306 r_nbd_other 0.235 r_nbd_refined 0.229
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 3.916 r_dihedral_angle_1_deg 3.664 r_scbond_it 2.628 r_angle_refined_deg 1.994 r_mcangle_it 1.622 r_angle_other_deg 1.039 r_mcbond_it 0.953 r_symmetry_vdw_other 0.306 r_nbd_other 0.235 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.127 r_chiral_restr 0.121 r_nbtor_other 0.1 r_metal_ion_refined 0.098 r_bond_refined_d 0.024 r_gen_planes_refined 0.011 r_gen_planes_other 0.007 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5229 Nucleic Acid Atoms Solvent Atoms 73 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing