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Diethylphosphorylated Butyrylcholinesterase (Nonaged) Obtained By Reaction With Echothiophate
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1POI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 AMMONIUM SULFATE, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 154.463 α = 90 b = 154.463 β = 90 c = 127.011 γ = 90
Symmetry Space Group I 4 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 2003-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 97.3 0.058 29 9.2 43695
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 98.2 0.462 5.5 9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1POI 2.1 40 38613 2064 90.42 0.18569 0.18369 0.1832 0.22274 0.221 RANDOM 42.282
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.06 -1.06 2.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.891 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_4_deg 15.744 r_dihedral_angle_1_deg 6.422 r_scangle_it 3.868 r_scbond_it 2.757 r_mcangle_it 1.788 r_angle_refined_deg 1.714 r_mcbond_it 1.299 r_symmetry_hbond_refined 0.384
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.891 r_dihedral_angle_3_deg 16.268 r_dihedral_angle_4_deg 15.744 r_dihedral_angle_1_deg 6.422 r_scangle_it 3.868 r_scbond_it 2.757 r_mcangle_it 1.788 r_angle_refined_deg 1.714 r_mcbond_it 1.299 r_symmetry_hbond_refined 0.384 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.223 r_nbd_refined 0.211 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.127 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4180 Nucleic Acid Atoms Solvent Atoms 290 Heterogen Atoms 190
Software Software Software Name Purpose SCALEPACK data scaling AMoRE phasing REFMAC refinement