1XFL
Solution Structure of Thioredoxin h1 from Arabidopsis Thaliana
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-SEPARATED_NOESY | 0.5 MM U-15N,13C At3G51030;10MM PHOSPHATE BUFFER; 50MM KCL; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 mM KCL | 5.5 | AMBIENT | 298 | |
2 | 3D_ 13C-SEPARATED_NOESY | 0.5 MM U-15N,13C At3G51030;10MM PHOSPHATE BUFFER; 50MM KCL; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 mM KCL | 5.5 | AMBIENT | 298 | |
3 | 3D 13C- SEPARATED NOESY-AROMATIC | 0.5 MM U-15N,13C At3G51030;10MM PHOSPHATE BUFFER; 50MM KCL; 90% H2O, 10% D2O | 90% H2O/10% D2O | 50 mM KCL | 5.5 | AMBIENT | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DRX | 600 |
NMR Refinement | ||
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Method | Details | Software |
TORSION ANGLE DYNAMICS FOLLOWED BY CARTESIAN MOLECULAR DYNAMICS IN EXPLICIT SOLVENT | INITIAL STRUCTURES WERE GENERATED USING THE CANDID MODULE OF CYANA. ADDITIONAL NOE ASSIGNMENTS WERE DETERMINED MANUALLY. PHI AND PSI TORSION ANGLE CONSTRAINTS WERE GENERATED FROM CHEMICAL SHIFT DATABASE SEARCHING USING THE PROGRAM TALOS (G. CORNILESCU). | CYANA 1.0.6, XPLOR-NIH |
NMR Ensemble Information | |
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Conformer Selection Criteria | target function |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (closest to the average) |
Additional NMR Experimental Information | |
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Details | CHEMICAL SHIFT ASSIGNMENTS WERE OBTAINED FROM STANDARD 3D TRIPLE-RESONANCE EXPERIMENTS, USING THE AUTOMATED METHOD OF GARANT (CHRISTIAN BARTELS). |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | CYANA 1.0.6, XPLOR-NIH | 2.0.6 | GUENTERT (CYANA), CLORE (XPLOR-NIH) |
2 | collection | XwinNMR | 3.1 | |
3 | processing | NMRPipe | 2.1 | |
4 | data analysis | XEASY | 1.3.1 | |
5 | data analysis | SPSCAN | 1.1.0 |