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Crystal structures of novel monomeric monocot mannose-binding lectins from Gastrodia elata
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 277 ammonium sulfate, dioxane, MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 2.35 47.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.087 α = 90 b = 91.488 β = 90 c = 81.132 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 CCD ADSC QUANTUM 4 2002-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 1.0 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 24.7 99.8 0.097 6.7 31377 31341 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.11 99.8 0.296 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 24.69 31339 29785 1553 100 0.183 0.16739 0.16548 0.1681 0.20606 0.2071 RANDOM 20.265
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 -0.02 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.181 r_scangle_it 2.925 r_scbond_it 1.776 r_mcangle_it 1.356 r_angle_refined_deg 1.104 r_mcbond_it 0.697 r_symmetry_vdw_refined 0.214 r_symmetry_hbond_refined 0.2 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.114
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.181 r_scangle_it 2.925 r_scbond_it 1.776 r_mcangle_it 1.356 r_angle_refined_deg 1.104 r_mcbond_it 0.697 r_symmetry_vdw_refined 0.214 r_symmetry_hbond_refined 0.2 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.114 r_chiral_restr 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3442 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing