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Crystal structure of the benzylpenicillin-acylated BlaR1 sensor domain from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 291 26-29% PEG 3350, 0.2M NaCl, 0.1M Bis-Tris, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2 39.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.386 α = 90 b = 88.386 β = 90 c = 125.06 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-13 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X8C 0.97911, 0.97940, 0.90000 NSLS X8C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99 33864 33864
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 99
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.4 30 19844 18873 971 99.14 0.22236 0.2196 0.2245 0.27451 0.2814 RANDOM 21.503
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.321 r_scangle_it 3.17 r_scbond_it 2.222 r_angle_refined_deg 1.796 r_mcangle_it 1.181 r_angle_other_deg 0.967 r_mcbond_it 0.637 r_symmetry_vdw_other 0.301 r_nbd_other 0.241 r_symmetry_hbond_refined 0.234
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.321 r_scangle_it 3.17 r_scbond_it 2.222 r_angle_refined_deg 1.796 r_mcangle_it 1.181 r_angle_other_deg 0.967 r_mcbond_it 0.637 r_symmetry_vdw_other 0.301 r_nbd_other 0.241 r_symmetry_hbond_refined 0.234 r_symmetry_vdw_refined 0.229 r_nbd_refined 0.227 r_xyhbond_nbd_refined 0.207 r_chiral_restr 0.113 r_nbtor_other 0.098 r_bond_refined_d 0.02 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4065 Nucleic Acid Atoms Solvent Atoms 41 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SOLVE phasing