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The crystal structure of human adenovirus 2 penton base
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other electron microscopy map of ad3 dodecahedron
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 288 1.6M Ammonium sulfate, 10% dioxane, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 3.7 66.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 435.984 α = 90 b = 300.168 β = 104.36 c = 420.621 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-05-19 M SINGLE WAVELENGTH 2 1 x-ray CCD ADSC QUANTUM 4 2003-05-19 M SINGLE WAVELENGTH 3 1 x-ray CCD ADSC QUANTUM 4 2003-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1 2 SYNCHROTRON ESRF BEAMLINE ID14-2 0.933 ESRF ID14-2 3 SYNCHROTRON ESRF BEAMLINE ID14-4 0.933 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2,3 3.3 25 57.3 0.21 0.21 2.9 1.5 657395 447016 1.6 1.6 118.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 3.3 3.39 22 0.47 0.47 1.6 1 12708
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT electron microscopy map of ad3 dodecahedron 3.3 20 460825 445700 22325 57.1 0.307 0.307 0.2963 0.307 0.2966 SHELLS 62.7
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.51 17.68 0.05 -3.57
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 25.5 c_scangle_it 3.21 c_mcangle_it 2.84 c_angle_deg 1.9 c_scbond_it 1.88 c_mcbond_it 1.56 c_improper_angle_d 1.31 c_bond_d 0.012
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3632 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 45
Software Software Software Name Purpose CNS refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing RAVE phasing