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Crystal structure of PA3566 from Pseudomonas aeruginosa
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.8 294 Ammonium sulfate, Sodium citrate, pH 5.8, VAPOR DIFFUSION, HANGING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 1.9 35.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 104.555 α = 90 b = 38.395 β = 90 c = 63.72 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD SBC-2 Mirrors 2004-04-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.96498, 0.97872, 0.98024 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.78 50 97.1 0.053 25.8 5.9 25374
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.78 1.86 85.4 0.378 3.1 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.78 63.76 23288 1256 96.71 0.16715 0.1641 0.3793 0.22297 0.4003 RANDOM 53.148
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 1.06 -1.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.94 r_dihedral_angle_4_deg 15.43 r_dihedral_angle_3_deg 13.652 r_sphericity_free 8.687 r_dihedral_angle_1_deg 6.324 r_scangle_it 4.728 r_scbond_it 3.317 r_sphericity_bonded 2.778 r_mcangle_it 2.174 r_rigid_bond_restr 1.771
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.94 r_dihedral_angle_4_deg 15.43 r_dihedral_angle_3_deg 13.652 r_sphericity_free 8.687 r_dihedral_angle_1_deg 6.324 r_scangle_it 4.728 r_scbond_it 3.317 r_sphericity_bonded 2.778 r_mcangle_it 2.174 r_rigid_bond_restr 1.771 r_mcbond_it 1.765 r_angle_refined_deg 1.661 r_angle_other_deg 0.832 r_mcbond_other 0.551 r_symmetry_vdw_other 0.234 r_nbd_refined 0.214 r_symmetry_vdw_refined 0.205 r_nbd_other 0.193 r_nbtor_refined 0.173 r_xyhbond_nbd_refined 0.153 r_symmetry_hbond_refined 0.123 r_chiral_restr 0.098 r_nbtor_other 0.086 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2392 Nucleic Acid Atoms Solvent Atoms 196 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling SHELXS phasing