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Calmodulin complexed with a peptide from a human death-associated protein kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.8 295 sodium acetate, PEG 1500, calcium chloride, pH 4.8, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2 37.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.07 α = 90 b = 33.76 β = 110.04 c = 73.87 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-07-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 0.8043 EMBL/DESY, HAMBURG X13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 20 98 0.079 11.1 3 10397 10397 -3 -3 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 99 0.364 3.5 3 1421
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2 20 -3 10396 10396 520 98.29 0.22711 0.22711 0.22441 0.233 0.27872 0.2888 RANDOM 36.022
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.37 0.08 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.804 r_dihedral_angle_4_deg 17.53 r_dihedral_angle_3_deg 16.988 r_dihedral_angle_1_deg 5.579 r_scangle_it 1.466 r_scbond_it 1.121 r_mcangle_it 1.05 r_angle_refined_deg 0.988 r_angle_other_deg 0.773 r_mcbond_it 0.682
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.804 r_dihedral_angle_4_deg 17.53 r_dihedral_angle_3_deg 16.988 r_dihedral_angle_1_deg 5.579 r_scangle_it 1.466 r_scbond_it 1.121 r_mcangle_it 1.05 r_angle_refined_deg 0.988 r_angle_other_deg 0.773 r_mcbond_it 0.682 r_symmetry_hbond_refined 0.222 r_nbd_other 0.202 r_symmetry_vdw_other 0.195 r_nbd_refined 0.194 r_symmetry_vdw_refined 0.181 r_xyhbond_nbd_refined 0.177 r_metal_ion_refined 0.148 r_mcbond_other 0.111 r_nbtor_other 0.084 r_chiral_restr 0.059 r_bond_refined_d 0.009 r_gen_planes_refined 0.003 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1328 Nucleic Acid Atoms Solvent Atoms 90 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing