☰ Navigation Tabs
Identification of novel p38 alpha MAP Kinase inhibitors using fragment-based lead generation.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 pH 7.00
Crystal Properties Matthews coefficient Solvent content 3.04 59.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.775 α = 90 b = 85.305 β = 90 c = 126.639 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 70.71 90.8 0.09 4.8 2.5 46857 2 26.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.8 70.71 34025 1829 76.5 0.194 0.191 0.234 RANDOM 24.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.18 -0.66 0.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.767 r_dihedral_angle_4_deg 21.816 r_dihedral_angle_3_deg 14.466 r_dihedral_angle_1_deg 5.28 r_scangle_it 2.838 r_mcangle_it 2.337 r_mcbond_it 2.013 r_scbond_it 1.887 r_angle_refined_deg 1.597 r_angle_other_deg 0.779
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.767 r_dihedral_angle_4_deg 21.816 r_dihedral_angle_3_deg 14.466 r_dihedral_angle_1_deg 5.28 r_scangle_it 2.838 r_mcangle_it 2.337 r_mcbond_it 2.013 r_scbond_it 1.887 r_angle_refined_deg 1.597 r_angle_other_deg 0.779 r_symmetry_vdw_other 0.217 r_nbd_refined 0.2 r_symmetry_hbond_refined 0.184 r_nbtor_refined 0.174 r_nbd_other 0.169 r_xyhbond_nbd_refined 0.158 r_symmetry_vdw_refined 0.148 r_nbtor_other 0.082 r_chiral_restr 0.069 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2834 Nucleic Acid Atoms Solvent Atoms 395 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling DENCOR phasing