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Enzymatic and Structural Characterisation of Non Peptide Ligand Cyclophilin Complexes
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CWH PDB ENTRY 1CWH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 100MM TRIS.HCL (PH 8.0), 22% (W/V) PEG 8000, 5% (V/V) DMSO, 0.02% NAN3.
Crystal Properties Matthews coefficient Solvent content 1.9 36.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 36.307 α = 90 b = 54.536 β = 90 c = 71.099 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 300 1998-08-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 24 90.4 0.04 16 10.5 17641 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.68 86.1 0.05 10
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1CWH 1.65 15 15413 506 90.7 0.132 0.13 0.186 RANDOM 15.53
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.47 0.55 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.014 r_scangle_it 5.876 r_scbond_it 4.229 r_mcangle_it 3.047 r_mcbond_it 2.236 r_angle_refined_deg 1.541 r_angle_other_deg 0.82 r_symmetry_vdw_other 0.291 r_nbd_other 0.282 r_nbd_refined 0.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.014 r_scangle_it 5.876 r_scbond_it 4.229 r_mcangle_it 3.047 r_mcbond_it 2.236 r_angle_refined_deg 1.541 r_angle_other_deg 0.82 r_symmetry_vdw_other 0.291 r_nbd_other 0.282 r_nbd_refined 0.253 r_nbtor_refined 0.253 r_xyhbond_nbd_refined 0.216 r_symmetry_hbond_refined 0.211 r_symmetry_vdw_refined 0.15 r_chiral_restr 0.101 r_nbtor_other 0.093 r_bond_refined_d 0.007 r_gen_planes_refined 0.006 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1266 Nucleic Acid Atoms Solvent Atoms 222 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing