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PSEUDOMONAS AERUGINOSA LECTIN II (PA-IIL)COMPLEXED WITH LACTO-N-NEO- FUCOPENTAOSE V(LNPFV)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GZT PDB ENTRY 1GZT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 TRIS HCL 0.1M, PH8.5, 1.75 M AMMNONIUM SULFATE, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.3 45.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 47.015 α = 85.35 b = 48.352 β = 80.05 c = 52.472 γ = 65.6
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MULTILAYER MIRROR 2004-02-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.05 14.51 93.3 0.07 7 4.1 180957
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.05 1.08 89.5 0.32 1.8 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GZT 1.05 14.51 171406 9072 93.3 0.106 0.105 0.1168 0.123 0.1332 RANDOM 7.31
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.259 r_scangle_it 4.905 r_scbond_it 3.522 r_mcangle_it 2.849 r_angle_refined_deg 2.059 r_mcbond_it 2.018 r_angle_other_deg 1.292 r_symmetry_vdw_other 0.348 r_nbd_other 0.275 r_xyhbond_nbd_refined 0.275
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.259 r_scangle_it 4.905 r_scbond_it 3.522 r_mcangle_it 2.849 r_angle_refined_deg 2.059 r_mcbond_it 2.018 r_angle_other_deg 1.292 r_symmetry_vdw_other 0.348 r_nbd_other 0.275 r_xyhbond_nbd_refined 0.275 r_nbd_refined 0.247 r_symmetry_hbond_refined 0.229 r_symmetry_vdw_refined 0.169 r_chiral_restr 0.156 r_nbtor_other 0.094 r_bond_refined_d 0.021 r_gen_planes_refined 0.017 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3308 Nucleic Acid Atoms Solvent Atoms 727 Heterogen Atoms 236
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling ACORN phasing