1W6J

Structure of human OSC in complex with Ro 48-8071


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2SQCPDB ENTRY 2SQC

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
125% (W/V) PEG3350 0.4M AMMONIUM ACETATE 0.1M TRIS PH 8.5 10% (V/V) ETHYLENE GLYCOL
Crystal Properties
Matthews coefficientSolvent content
3.6165.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 189.915α = 90
b = 202.424β = 90
c = 62.638γ = 90
Symmetry
Space GroupC 2 2 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-03-03MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X06SASLSX06SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.220980.17.7360002-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.22.2697.50.382.53

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 2SQC2.2141.4256956303397.70.1710.170.199RANDOM36.08
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.69-2.791.1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.632
r_dihedral_angle_3_deg14.608
r_dihedral_angle_4_deg12.345
r_dihedral_angle_1_deg5.261
r_scangle_it2.219
r_scbond_it1.39
r_angle_refined_deg1.18
r_mcangle_it1.015
r_angle_other_deg0.831
r_mcbond_it0.645
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.632
r_dihedral_angle_3_deg14.608
r_dihedral_angle_4_deg12.345
r_dihedral_angle_1_deg5.261
r_scangle_it2.219
r_scbond_it1.39
r_angle_refined_deg1.18
r_mcangle_it1.015
r_angle_other_deg0.831
r_mcbond_it0.645
r_symmetry_vdw_other0.273
r_symmetry_hbond_refined0.241
r_nbd_refined0.205
r_nbd_other0.184
r_symmetry_vdw_refined0.152
r_xyhbond_nbd_refined0.142
r_nbtor_other0.083
r_chiral_restr0.071
r_bond_refined_d0.009
r_gen_planes_refined0.004
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5824
Nucleic Acid Atoms
Solvent Atoms416
Heterogen Atoms90

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing