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Crystal structure of S. pneumoniae hyaluronate lyase in complex with palmitoyl-vitamin C
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 62% SATURATED AMMONIUM SULFATE, 100 MM SODIUM CACODYLATE PH6.00, 100 MM SODIUM CHLORIDE, 10 MM EDTA, 2% DIOXANE
Crystal Properties Matthews coefficient Solvent content 2.65 53.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.131 α = 90 b = 102.714 β = 90 c = 102.41 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC CCD M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 45.91 99.6 0.07 22.8 5.8 106633 20.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99 0.88 1.3 5.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION OTHER THROUGHOUT 1.65 45.91 106633 5349 99.6 0.1924 0.1924 0.1962 0.21 0.1968 RANDOM 24
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.258 -0.415 -5.843
RMS Deviations Key Refinement Restraint Deviation c_improper_angle_d 2.95 c_scangle_it 2.95 c_dihedral_angle_d 1.95 c_scbond_it 1.95 c_mcangle_it 1.67 c_angle_deg 1.25378 c_mcbond_it 1.11 c_bond_d 0.004925 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_improper_angle_d 2.95 c_scangle_it 2.95 c_dihedral_angle_d 1.95 c_scbond_it 1.95 c_mcangle_it 1.67 c_angle_deg 1.25378 c_mcbond_it 1.11 c_bond_d 0.004925 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5790 Nucleic Acid Atoms Solvent Atoms 564 Heterogen Atoms 72
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction HKL-2000 data scaling