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Phenylalanine ammonia-lyase (PAL) from Petroselinum crispum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 8% PEG-6000, 40 MM MGCL2, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.2 44
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 119.96 α = 90 b = 160.81 β = 90 c = 141.33 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2003-11-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.5 0.9798,0.9800,0.9824 SRS PX9.5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 50 96.8 0.049 21.4 7.1 156788
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 88.2 0.392 4.5 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 50 139351 7349 98.3 0.168 0.166 0.1796 0.199 0.2093 RANDOM 21.93
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 0.09 -0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.939 r_scangle_it 3.605 r_scbond_it 2.194 r_mcangle_it 1.41 r_angle_refined_deg 1.366 r_angle_other_deg 0.876 r_mcbond_it 0.767 r_symmetry_vdw_other 0.288 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.939 r_scangle_it 3.605 r_scbond_it 2.194 r_mcangle_it 1.41 r_angle_refined_deg 1.366 r_angle_other_deg 0.876 r_mcbond_it 0.767 r_symmetry_vdw_other 0.288 r_symmetry_vdw_refined 0.273 r_nbd_refined 0.242 r_nbd_other 0.234 r_symmetry_hbond_refined 0.176 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.083 r_nbtor_other 0.083 r_bond_refined_d 0.014 r_gen_planes_other 0.007 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10576 Nucleic Acid Atoms Solvent Atoms 1071 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SHELXD phasing MLPHARE phasing RESOLVE phasing