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Crystal structure of human cytochrome P450 3A4
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W0E PDB ENTRY 1W0E
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 0.1 HEPES PH 7.5, 0.25M KCL, 12% PEG 4000, 5% MPD, 0.025M C
Crystal Properties Matthews coefficient Solvent content 2.4 47.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.41 α = 90 b = 101.51 β = 90 c = 128.66 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2003-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 65 97.8 0.045 11.9 3.6 14804
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.79 97.2 0.328 2.2 3.4
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1W0E 2.65 65 14651 739 97.1 0.2392 0.2361 0.3032 0.2986 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.011 -0.14 0.129
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.857 c_mcangle_it 2.567 c_scbond_it 1.899 c_mcbond_it 1.478 c_angle_deg 1.08 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 2.857 c_mcangle_it 2.567 c_scbond_it 1.899 c_mcbond_it 1.478 c_angle_deg 1.08 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3681 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 66
Software Software Software Name Purpose CNX refinement MOSFLM data reduction SCALA data scaling