X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1DEWPDB ENTRY 1DEW

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.2845

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 91.044α = 90
b = 126.477β = 90
c = 43.004γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC CCDMIRRORS2002-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-2ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82097.50.06217.215.1685558
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.8690.20.4422.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1DEW1.820.143461232997.50.1880.1860.223RANDOM32.08
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.05-2.37-1.69
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.509
r_dihedral_angle_4_deg16.22
r_dihedral_angle_3_deg14.074
r_dihedral_angle_1_deg6.005
r_scangle_it3.91
r_scbond_it2.815
r_angle_refined_deg1.661
r_mcangle_it1.572
r_mcbond_it1.426
r_angle_other_deg0.872
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.509
r_dihedral_angle_4_deg16.22
r_dihedral_angle_3_deg14.074
r_dihedral_angle_1_deg6.005
r_scangle_it3.91
r_scbond_it2.815
r_angle_refined_deg1.661
r_mcangle_it1.572
r_mcbond_it1.426
r_angle_other_deg0.872
r_mcbond_other0.311
r_symmetry_vdw_refined0.291
r_symmetry_vdw_other0.235
r_nbd_refined0.211
r_nbd_other0.186
r_xyhbond_nbd_refined0.18
r_symmetry_hbond_refined0.17
r_chiral_restr0.105
r_nbtor_other0.085
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_bond_other_d0.001
r_gen_planes_other0.001
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3764
Nucleic Acid Atoms
Solvent Atoms448
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing