☰ Navigation Tabs
Crystal Structure Analysis of the Anti-testosterone Fab in Complex with Testosterone
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1I9J PDB ENTRY 1I9J
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6 298 Peg 3350, MES, pH 6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.46 49.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.252 α = 90 b = 82.252 β = 90 c = 120.059 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE RIGAKU RAXIS IIC 1998-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 99 97 0.057 23102 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.23 33
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1I9J 2.15 50 1 25047 23102 2372 0.211 0.2108 0.274 0.2733 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 -1.692 -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.037 c_mcangle_it 2.728 c_scbond_it 2.103 c_mcbond_it 1.639 c_angle_deg 1.39952 c_bond_d 0.006749 o_bond_d_na o_bond_d_prot o_angle_d o_angle_d_na
RMS Deviations Key Refinement Restraint Deviation c_scangle_it 3.037 c_mcangle_it 2.728 c_scbond_it 2.103 c_mcbond_it 1.639 c_angle_deg 1.39952 c_bond_d 0.006749 o_bond_d_na o_bond_d_prot o_angle_d o_angle_d_na o_angle_d_prot o_angle_deg_na o_angle_deg_prot o_dihedral_angle_d o_dihedral_angle_d_na o_dihedral_angle_d_prot o_improper_angle_d o_improper_angle_d_na o_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3357 Nucleic Acid Atoms Solvent Atoms 265 Heterogen Atoms 21
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CNS refinement CNS phasing