1VMP
STRUCTURE OF THE ANTI-HIV CHEMOKINE VMIP-II
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D NOESY | 0.01 | 5.4 | 1 atm | 298 | |||
2 | 4D NOESY | 0.01 | 5.4 | 1 atm | 298 | |||
3 | 3D TOCSY | 0.01 | 5.4 | 1 atm | 298 | |||
4 | HNHA | 0.01 | 5.4 | 1 atm | 298 | |||
5 | HNHB | 0.01 | 5.4 | 1 atm | 298 | |||
6 | HACAHB | 0.01 | 5.4 | 1 atm | 298 | |||
7 | HBHACONH | 0.01 | 5.4 | 1 atm | 298 | |||
8 | CBCACONH | 0.01 | 5.4 | 1 atm | 298 | |||
9 | CBCANH | 0.01 | 5.4 | 1 atm | 298 | |||
10 | HCCHCOSY | 0.01 | 5.4 | 1 atm | 298 | |||
11 | HCCHTOCSY | 0.01 | 5.4 | 1 atm | 298 | |||
12 | CC(CO)NH | 0.01 | 5.4 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITYPLUS | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | THE STRUCTURES WERE CALCULATED USING THE SIMULATED ANNEALING PROTOCOL OF NILGES ET AL. (1988) FEBS LETT. 229, 129-136 USING THE PROGRAM XPLOR 3.1 ( BRUNGER) MODIFIED TO INCORPORATE COUPLING CONSTANTS (GARRETT EL AL. (1984) J. MAGN. RESON. SER. B 104, 99-103) AND A CONFORMATIONAL DATA BASE POTENTIAL ( KUSZEWSKI ET AL. (1996) PROTEIN SCI 5, 1067- 1080 AND (1997) J. MAGN. RESON. 125, 171-177). | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | MINIMIZED MEAN STRUCTURE |
Conformers Calculated Total Number | 30 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (n/a) |
Additional NMR Experimental Information | |
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Details | MEAN STRUCTURE. THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR SPECTROSCOPY ON 13C, 15N-LABELED VMIP-II |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.1 | BRUNGER |
2 | structure solution | X-PLOR MODIFIED |