☰ Navigation Tabs
Crystal structure of MazG nucleotide pyrophosphohydrolase (13816655) from Sulfolobus solfataricus at 1.46 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 1.5M Li2SO4, 0.1M HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.3 62.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.749 α = 90 b = 79.749 β = 90 c = 95.909 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2004-09-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 0.979834,0.979694,1.020035 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.46 25.62 93.3 0.044 19.6 5.9 25360 23.08
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.46 1.54 57.6 0.435 2.2 2 2241
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.46 25.62 24059 1288 93.34 0.14201 0.14178 0.1535 0.14633 0.1613 RANDOM 14.062
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.19 -0.19 0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.014 r_dihedral_angle_4_deg 14.745 r_dihedral_angle_3_deg 12.092 r_scangle_it 5.367 r_dihedral_angle_1_deg 4.933 r_scbond_it 4.279 r_mcangle_it 2.371 r_mcbond_it 1.903 r_angle_refined_deg 1.235 r_angle_other_deg 0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.014 r_dihedral_angle_4_deg 14.745 r_dihedral_angle_3_deg 12.092 r_scangle_it 5.367 r_dihedral_angle_1_deg 4.933 r_scbond_it 4.279 r_mcangle_it 2.371 r_mcbond_it 1.903 r_angle_refined_deg 1.235 r_angle_other_deg 0.8 r_xyhbond_nbd_refined 0.381 r_mcbond_other 0.318 r_nbd_refined 0.253 r_metal_ion_refined 0.204 r_nbtor_refined 0.183 r_symmetry_hbond_refined 0.177 r_nbd_other 0.149 r_symmetry_vdw_other 0.133 r_symmetry_vdw_refined 0.115 r_nbtor_other 0.084 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 655 Nucleic Acid Atoms Solvent Atoms 106 Heterogen Atoms 10
Software Software Software Name Purpose XDS data scaling SCALA data scaling SHELX model building autoSHARP phasing REFMAC refinement XDS data reduction CCP4 data scaling SHELX phasing