☰ Navigation Tabs
Crystal structure of 30S ribosomal protein S6 (TM0603) from Thermotoga maritima at 1.70 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LOU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 293 20.0% PEG-3350, 0.1M NaAcetate, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.37 47.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.815 α = 90 b = 60.815 β = 90 c = 76.543 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 flat mirror 2004-05-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL11-1 SSRL BL11-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 47.62 96.2 0.073 16.2 5.4 15840 29.25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 73.9 0.391 2.1 2.8 880
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1lou 1.7 47.62 15000 788 96.32 0.18549 0.18287 0.1918 0.23735 0.252 RANDOM 22.517
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.65 0.65 -1.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.345 r_dihedral_angle_4_deg 15.132 r_dihedral_angle_3_deg 12.855 r_dihedral_angle_1_deg 5.767 r_scangle_it 4.071 r_scbond_it 2.832 r_angle_refined_deg 1.643 r_mcangle_it 1.577 r_mcbond_it 1.32 r_angle_other_deg 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 25.345 r_dihedral_angle_4_deg 15.132 r_dihedral_angle_3_deg 12.855 r_dihedral_angle_1_deg 5.767 r_scangle_it 4.071 r_scbond_it 2.832 r_angle_refined_deg 1.643 r_mcangle_it 1.577 r_mcbond_it 1.32 r_angle_other_deg 0.927 r_mcbond_other 0.351 r_symmetry_vdw_other 0.318 r_nbd_refined 0.205 r_nbd_other 0.202 r_xyhbond_nbd_refined 0.169 r_symmetry_hbond_refined 0.145 r_chiral_restr 0.106 r_nbtor_other 0.083 r_symmetry_vdw_refined 0.062 r_bond_refined_d 0.018 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 922 Nucleic Acid Atoms Solvent Atoms 114 Heterogen Atoms 8
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling