☰ Navigation Tabs
Crystal structure of Acetyl xylan esterase (TM0077) from Thermotoga maritima at 2.10 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 4.2 293 20% PEG-300, 10% glycerol, 0.1M Phosphate-citrate pH 4.2 0.2 M (NH4)2SO4 4.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.93 57.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 152.64 α = 90 b = 130.952 β = 118.93 c = 157.815 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2001-05-02 M SINGLE WAVELENGTH 2 1 x-ray M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 SSRL BL9-2 2 SYNCHROTRON SSRL BEAMLINE BL9-2 0.918370,0.979126 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.1 29.56 93 0.09 9.1 3.8 293140 32.49
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.1 2.21 67.2 0.433 2.6 3.5 30908
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.1 29.56 278371 14726 92.77 0.18554 0.18354 0.1948 0.22336 0.2317 RANDOM 24.959
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.71 -0.82 2.25 -1.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.549 r_dihedral_angle_4_deg 17.373 r_dihedral_angle_3_deg 14.046 r_dihedral_angle_1_deg 6.308 r_scangle_it 6.035 r_scbond_it 4.775 r_mcangle_it 2.593 r_mcbond_it 2.176 r_angle_refined_deg 1.477 r_angle_other_deg 0.927
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 30.549 r_dihedral_angle_4_deg 17.373 r_dihedral_angle_3_deg 14.046 r_dihedral_angle_1_deg 6.308 r_scangle_it 6.035 r_scbond_it 4.775 r_mcangle_it 2.593 r_mcbond_it 2.176 r_angle_refined_deg 1.477 r_angle_other_deg 0.927 r_symmetry_vdw_other 0.333 r_symmetry_vdw_refined 0.214 r_symmetry_hbond_refined 0.209 r_nbd_refined 0.206 r_mcbond_other 0.198 r_nbd_other 0.193 r_nbtor_refined 0.188 r_xyhbond_nbd_refined 0.163 r_chiral_restr 0.085 r_nbtor_other 0.085 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 31173 Nucleic Acid Atoms Solvent Atoms 2464 Heterogen Atoms 6
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHARP phasing autoSHARP phasing SHELX model building WARP model building REFMAC refinement CCP4 data scaling SHELX phasing ARP/wARP model building