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Crystal structure of a gdsl-like lipase (alr1529) from nostoc sp. pcc 7120 at 2.01 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION,SITTING DROP,NANODROP 7.5 277 10% iso-propanol, 20% PEG-4000, 0.1M Sodium HEPES pH 7.5, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.43 48.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.192 α = 90 b = 56.192 β = 90 c = 129.318 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC 2003-07-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.01 43.32 90.6 0.07 13 5.6 15039 57.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.01 2.12 65.7 0.277 3.4 2.8 1526
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.01 43.32 14261 749 90.16 0.17454 0.17247 0.1799 0.21832 0.228 RANDOM 41.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.98 0.99 1.98 -2.97
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.6 r_dihedral_angle_1_deg 5.937 r_scbond_it 5.826 r_mcangle_it 3.649 r_mcbond_it 2.044 r_angle_refined_deg 1.435 r_angle_other_deg 0.882 r_symmetry_vdw_other 0.297 r_nbd_other 0.239 r_nbd_refined 0.21
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.6 r_dihedral_angle_1_deg 5.937 r_scbond_it 5.826 r_mcangle_it 3.649 r_mcbond_it 2.044 r_angle_refined_deg 1.435 r_angle_other_deg 0.882 r_symmetry_vdw_other 0.297 r_nbd_other 0.239 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.156 r_symmetry_vdw_refined 0.15 r_symmetry_hbond_refined 0.138 r_chiral_restr 0.091 r_nbtor_other 0.085 r_bond_refined_d 0.016 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1611 Nucleic Acid Atoms Solvent Atoms 92 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling MOLREP phasing REFMAC refinement CCP4 data scaling