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Carbohydrate binding module (CBM6cm-2) from Cellvibrio mixtus lichenase 5A in complex with Glc-4Glc-3Glc-4Glc
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GMM PDB ENTRY 1GMM
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7 11% PEG 6000, 2.0 M NACL, pH 7.00
Crystal Properties Matthews coefficient Solvent content 2.2 44.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.924 α = 90 b = 102.41 β = 90 c = 31.686 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 2003-11-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-3 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 24.3 99.6 0.112 4.5 4.7 10234
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.98 99 0.353 2.3 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GMM 2 51.3 8391 423 99.3 0.152 0.15 0.209 RANDOM 9.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.47 0.28 -1.74
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.448 r_scangle_it 3.635 r_scbond_it 2.668 r_angle_refined_deg 1.759 r_mcangle_it 1.733 r_mcbond_it 1.039 r_angle_other_deg 0.988 r_symmetry_vdw_refined 0.539 r_nbd_other 0.274 r_symmetry_vdw_other 0.243
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.448 r_scangle_it 3.635 r_scbond_it 2.668 r_angle_refined_deg 1.759 r_mcangle_it 1.733 r_mcbond_it 1.039 r_angle_other_deg 0.988 r_symmetry_vdw_refined 0.539 r_nbd_other 0.274 r_symmetry_vdw_other 0.243 r_nbd_refined 0.21 r_xyhbond_nbd_refined 0.205 r_symmetry_hbond_refined 0.197 r_chiral_restr 0.112 r_metal_ion_refined 0.09 r_nbtor_other 0.088 r_gen_planes_other 0.03 r_bond_refined_d 0.021 r_gen_planes_refined 0.019 r_bond_other_d 0.003 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 973 Nucleic Acid Atoms Solvent Atoms 128 Heterogen Atoms 54
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing