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Human Hsp90-alpha with 9-Butyl-8-(2,5-dimethoxy-benzyl)-9H-purin-6-ylamine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1YER PDB ENTRY 1YER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 25% PEG MME 2000, 0.1M NA CACODYLATE, PH6.5, 0.2M MGCL2., pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.778 α = 90 b = 90.966 β = 90 c = 98.888 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RAXIS IV OSMIC BLUE MIRRORS 2002-07-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RUH3R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 87.7 0.062 9.1 4.8 20750
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.1 43.9 0.332 3.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1YER 2 67.42 18493 985 93.9 0.186 0.183 0.1939 0.248 0.2481 RANDOM 38.22
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 0.51 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.84 r_scangle_it 5.998 r_scbond_it 3.739 r_mcangle_it 2.195 r_angle_refined_deg 2.141 r_mcbond_it 1.246 r_symmetry_hbond_refined 0.374 r_symmetry_vdw_refined 0.291 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.193
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.84 r_scangle_it 5.998 r_scbond_it 3.739 r_mcangle_it 2.195 r_angle_refined_deg 2.141 r_mcbond_it 1.246 r_symmetry_hbond_refined 0.374 r_symmetry_vdw_refined 0.291 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.193 r_chiral_restr 0.132 r_bond_refined_d 0.026 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1636 Nucleic Acid Atoms Solvent Atoms 274 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling MOLREP phasing