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The structural basis of the interaction between nonsense mediated decay factors UPF2 and UPF3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 100 MM AMMONIUM ACETATE, 15 MM MAGNESIUM ACETATE 50 MM SODIUM CACODYLATE 6.5, 8% ISOPROPANOL, pH 6.50
Crystal Properties Matthews coefficient Solvent content 2.9 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.306 α = 90 b = 100.178 β = 90 c = 153.458 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD TOROIDAL MIRROR 2003-04-16 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9393, 0.9792, 0.9795 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 33.7 99.5 0.064 13.74 4.3 79316
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.95 2.1 98.6 0.3 4.3 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.95 30 76925 2379 100 0.205 0.204 0.2111 0.227 0.2314 RANDOM 25.68
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.91 0.67 -1.58
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.103 r_scangle_it 2.598 r_scbond_it 1.577 r_angle_refined_deg 1.122 r_mcangle_it 0.927 r_angle_other_deg 0.8 r_mcbond_it 0.488 r_symmetry_vdw_other 0.3 r_nbd_other 0.217 r_nbd_refined 0.197
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.103 r_scangle_it 2.598 r_scbond_it 1.577 r_angle_refined_deg 1.122 r_mcangle_it 0.927 r_angle_other_deg 0.8 r_mcbond_it 0.488 r_symmetry_vdw_other 0.3 r_nbd_other 0.217 r_nbd_refined 0.197 r_symmetry_vdw_refined 0.192 r_xyhbond_nbd_refined 0.143 r_symmetry_hbond_refined 0.131 r_nbtor_other 0.079 r_chiral_restr 0.068 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5657 Nucleic Acid Atoms Solvent Atoms 314 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling SOLVE/RESOLVE phasing