☰ Navigation Tabs
The Structure of Human Erythrocyte NADH-cytochrome b5 Reductase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.6 286 PEG 4000, potassium phosphate, pH 7.6, VAPOR DIFFUSION, SITTING DROP, temperature 286K
Crystal Properties Matthews coefficient Solvent content 1.98 37.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.869 α = 90 b = 65.869 β = 90 c = 76.2 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV OSMIC Multilayer Optic mirror 2002-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU ULTRAX 18 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 23.7 99.4 0.056 0.05 8.7 5.2 32692 32639 3 -4 19.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.795 98.3 0.143 5.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.75 23.7 3 32639 30988 1651 99.41 0.1936 0.16723 0.16512 0.1665 0.2068 0.2082 RANDOM 24.098
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.539 r_scangle_it 2.184 r_scbond_it 1.223 r_angle_refined_deg 1.025 r_mcangle_it 0.901 r_mcbond_it 0.471 r_nbd_refined 0.183 r_symmetry_vdw_refined 0.122 r_symmetry_hbond_refined 0.102 r_xyhbond_nbd_refined 0.1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.539 r_scangle_it 2.184 r_scbond_it 1.223 r_angle_refined_deg 1.025 r_mcangle_it 0.901 r_mcbond_it 0.471 r_nbd_refined 0.183 r_symmetry_vdw_refined 0.122 r_symmetry_hbond_refined 0.102 r_xyhbond_nbd_refined 0.1 r_chiral_restr 0.07 r_bond_refined_d 0.006 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2173 Nucleic Acid Atoms Solvent Atoms 753 Heterogen Atoms 53
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MLPHARE phasing