☰ Navigation Tabs
Structure of Osmotically Inducible Protein C from Thermus thermophilus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.4 296 PEG 4000, Tris-HCl, pH 8.4, VAPOR DIFFUSION, SITTING DROP, temperature 296K
Crystal Properties Matthews coefficient Solvent content 1.9 34.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.58 α = 76.93 b = 40.95 β = 74.04 c = 48.14 γ = 64.05
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2003-02-28 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B1 0.97894, 0.97910, 0.97920, 0.97500, 1.000 SPring-8 BL26B1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 90.4 0.033 15 1.85 30286 30286
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 79.3 0.162 4.1 1.76
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 8 28490 28490 1535 93.1 0.18068 0.18068 0.17798 0.1874 0.23222 0.2382 RANDOM 25.284
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.96 -0.2 0.26 0.35 1.8 -0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.999 r_scangle_it 5.915 r_scbond_it 3.508 r_mcangle_it 2.269 r_angle_refined_deg 1.899 r_angle_other_deg 1.828 r_mcbond_it 1.298 r_symmetry_vdw_other 0.291 r_nbd_other 0.267 r_nbd_refined 0.212
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.999 r_scangle_it 5.915 r_scbond_it 3.508 r_mcangle_it 2.269 r_angle_refined_deg 1.899 r_angle_other_deg 1.828 r_mcbond_it 1.298 r_symmetry_vdw_other 0.291 r_nbd_other 0.267 r_nbd_refined 0.212 r_xyhbond_nbd_refined 0.169 r_symmetry_vdw_refined 0.159 r_chiral_restr 0.124 r_symmetry_hbond_refined 0.111 r_nbtor_other 0.091 r_bond_refined_d 0.023 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2132 Nucleic Acid Atoms Solvent Atoms 213 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction d*TREK data scaling SOLVE phasing