☰ Navigation Tabs
Structure of Protein of Unknown Function from Vibrio cholerae O1 biovar eltor str. N16961
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10.5 298 1.2M NaH2P04/0.8M K2HP04, CAPS, pH 10.5, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.27 45.73
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 66.006 α = 90 b = 66.006 β = 90 c = 47.831 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD SBC-1 Double crystal monochromatic, sagitally focused si(111) 2004-06-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.9796 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 56.8 95.99 24579 23325
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 56.8 24579 23325 1254 95.99 0.19148 0.19146 0.18903 0.196 0.23702 0.2494 RANDOM 23.364
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.12 -0.06 -0.12 0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.9 r_scangle_it 5.794 r_scbond_it 3.475 r_mcangle_it 2.204 r_angle_refined_deg 1.492 r_mcbond_it 1.1 r_angle_other_deg 0.866 r_symmetry_vdw_other 0.355 r_nbd_other 0.246 r_nbd_refined 0.24
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.9 r_scangle_it 5.794 r_scbond_it 3.475 r_mcangle_it 2.204 r_angle_refined_deg 1.492 r_mcbond_it 1.1 r_angle_other_deg 0.866 r_symmetry_vdw_other 0.355 r_nbd_other 0.246 r_nbd_refined 0.24 r_symmetry_hbond_refined 0.237 r_xyhbond_nbd_refined 0.181 r_symmetry_vdw_refined 0.144 r_chiral_restr 0.095 r_nbtor_other 0.088 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1952 Nucleic Acid Atoms Solvent Atoms 153 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement d*TREK data reduction HKL-2000 data scaling