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Transition state analog complex of muscle creatine kinase (R134K) mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1CRK pdb entry 1CRK
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293 20% PEG 8K, 25 mM ammonium acetate, 25 mM sodium nitrate and 0.1 M sodium cacodylate, pH 6.5., VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.2 42.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.689 α = 90 b = 92.572 β = 90 c = 165.553 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2002-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID 1.000 APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 38 90762 88822
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.694 84.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1CRK 1.65 38 88886 84376 4446 97.85 0.16673 0.16498 0.1783 0.20017 0.1836 RANDOM 14.999
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.24 r_dihedral_angle_4_deg 16.096 r_dihedral_angle_3_deg 13.371 r_dihedral_angle_1_deg 5.758 r_scangle_it 2.299 r_scbond_it 1.69 r_angle_refined_deg 1.214 r_angle_other_deg 1.122 r_mcangle_it 0.995 r_mcbond_it 0.9
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.24 r_dihedral_angle_4_deg 16.096 r_dihedral_angle_3_deg 13.371 r_dihedral_angle_1_deg 5.758 r_scangle_it 2.299 r_scbond_it 1.69 r_angle_refined_deg 1.214 r_angle_other_deg 1.122 r_mcangle_it 0.995 r_mcbond_it 0.9 r_nbd_refined 0.202 r_nbd_other 0.185 r_nbtor_refined 0.175 r_symmetry_vdw_other 0.15 r_symmetry_hbond_refined 0.14 r_xyhbond_nbd_refined 0.139 r_mcbond_other 0.139 r_symmetry_vdw_refined 0.117 r_chiral_restr 0.091 r_nbtor_other 0.083 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6048 Nucleic Acid Atoms Solvent Atoms 1155 Heterogen Atoms 69
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction CCP4 data scaling MOLREP phasing