X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1TZPMepA in the P21 form (1TZP)

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP6.5293ammonium sulfate, MES, PEG monomethyl ether 5000, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.0740.22

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 35.613α = 93.15
b = 77.988β = 95.93
c = 127.663γ = 90.75
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2004-04-27MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMPG/DESY, HAMBURG BEAMLINE BW60.9791, 0.9793, 1.2810MPG/DESY, HAMBURGBW6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.42097.10.0390.03914.11.910342310342336
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.42.4493.50.1510.15141.84917

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMAD combined with MRTHROUGHOUTMepA in the P21 form (1TZP)2.4204971149711265898.170.235510.235510.233930.2658RANDOM24.954
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.340.31-0.09-0.15-0.68-1.27
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it3.669
r_angle_other_deg3.527
r_mcangle_it2.625
r_scbond_it2.549
r_mcbond_it1.688
r_angle_refined_deg1.615
r_dihedral_angle_1_deg1.531
r_symmetry_vdw_other0.361
r_symmetry_hbond_refined0.313
r_nbd_other0.297
RMS Deviations
KeyRefinement Restraint Deviation
r_scangle_it3.669
r_angle_other_deg3.527
r_mcangle_it2.625
r_scbond_it2.549
r_mcbond_it1.688
r_angle_refined_deg1.615
r_dihedral_angle_1_deg1.531
r_symmetry_vdw_other0.361
r_symmetry_hbond_refined0.313
r_nbd_other0.297
r_symmetry_vdw_refined0.295
r_nbd_refined0.238
r_xyhbond_nbd_refined0.131
r_nbtor_other0.107
r_chiral_restr0.102
r_metal_ion_refined0.062
r_bond_refined_d0.011
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms11217
Nucleic Acid Atoms
Solvent Atoms55
Heterogen Atoms39

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing