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Crystal structure of Mycobacterium tuberculosis NAD kinase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.6 298 lithium sulfate, ammonium sulfate, sodium citrate, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 5.60
Crystal Properties Matthews coefficient Solvent content 2.5 55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 118.51 α = 90 b = 118.51 β = 90 c = 222.3 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-04-20 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.9793,0.9795,0.9392 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.8 50 99.8 38743 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 50 44644 38743 715 99.2 0.224 0.223 0.286 RANDOM 62.08
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.96 1.96 -3.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.652 r_scangle_it 4.557 r_scbond_it 2.521 r_angle_refined_deg 1.889 r_mcangle_it 1.697 r_mcbond_it 0.877 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.255 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.205
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.652 r_scangle_it 4.557 r_scbond_it 2.521 r_angle_refined_deg 1.889 r_mcangle_it 1.697 r_mcbond_it 0.877 r_symmetry_hbond_refined 0.321 r_nbd_refined 0.255 r_symmetry_vdw_refined 0.231 r_xyhbond_nbd_refined 0.205 r_chiral_restr 0.114 r_bond_refined_d 0.018 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8475 Nucleic Acid Atoms Solvent Atoms 303 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXS phasing REFMAC refinement CCP4 data scaling