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Crystal Structure of AAV2 Rep40-ADP complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1S9H PDB entry 1S9H (chain B)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 277 PEG 8k, sodium acetate, MgCl2, Tris, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 4K
Crystal Properties Matthews coefficient Solvent content 2.314 46.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71 α = 90 b = 71 β = 90 c = 95.396 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 109 CCD BRANDEIS - B4 toroidal mirror 2003-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12C 1.1 NSLS X12C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 97.9 0.062 0.062 17.6 16019 15662 -3 -3 17.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.1 50 97.9 0.062 0.062 17.6 15662
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1S9H (chain B) 2.1 19.8 2 2 14926 13428 1347 84.2 0.202 0.192 0.192 0.237 RANDOM 33.4
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.88 6.27 4.88 -9.76
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23 c_scangle_it 5.95 c_scbond_it 4.57 c_mcangle_it 4.06 c_mcbond_it 3.04 c_angle_deg 2.5 c_improper_angle_d 1.6 c_bond_d 0.018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2044 Nucleic Acid Atoms Solvent Atoms 212 Heterogen Atoms 27
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction NOVEL_R data scaling CNS phasing