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Crystal structure of an ABC-type phosphate transport receptor from Vibrio cholerae
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIQUID DIFFUSION 6.5 293 PegMME 20%, Kcl 0.2M, Tris-Bis, pH 6.5, LIQUID DIFFUSION
Crystal Properties Matthews coefficient Solvent content 2.12 42.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 84.63 α = 90 b = 103.932 β = 102.35 c = 126.687 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2004-05-20 M SINGLE WAVELENGTH 2 1 100 CCD ADSC QUANTUM 4 2004-06-10
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 1.009 NSLS X9A 2 SYNCHROTRON NSLS BEAMLINE X29A 0.979 NSLS X29A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.65 20 99.7 0.071 0.081 22.21 6.82 256149 256149 1 1 28
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.65 1.71 99.1 0.483 3.02
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.65 19.73 248059 7738 99.69 0.19388 0.19275 0.2022 0.23062 0.2365 RANDOM 24.066
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.201 r_dihedral_angle_1_deg 6.568 r_scbond_it 5.799 r_mcangle_it 4.19 r_mcbond_it 2.818 r_angle_refined_deg 2.248 r_angle_other_deg 1.066 r_symmetry_vdw_other 0.339 r_symmetry_vdw_refined 0.277 r_nbd_other 0.255
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 8.201 r_dihedral_angle_1_deg 6.568 r_scbond_it 5.799 r_mcangle_it 4.19 r_mcbond_it 2.818 r_angle_refined_deg 2.248 r_angle_other_deg 1.066 r_symmetry_vdw_other 0.339 r_symmetry_vdw_refined 0.277 r_nbd_other 0.255 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.178 r_xyhbond_nbd_refined 0.153 r_chiral_restr 0.149 r_nbtor_other 0.092 r_bond_refined_d 0.03 r_gen_planes_refined 0.013 r_gen_planes_other 0.01 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15285 Nucleic Acid Atoms Solvent Atoms 1412 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing SHELXE model building CCP4 phasing