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Structure of the S-adenosylmethionine dependent Enzyme MoaA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 Na formate, HEPES, DMSO, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 57.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.123 α = 90 b = 102.438 β = 90 c = 191.157 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS II 2004-02-15 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2004-02-20 M 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200 1.5418 2 SYNCHROTRON NSLS BEAMLINE X26C 1.7406 NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.8 50 44424 44424
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 2.8 2.85 98.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.8 20 27991 22497 1213 98.61 0.18858 0.18732 0.1989 0.21142 0.2138 RANDOM 38.084
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.07 1.43 -2.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.481 r_scangle_it 3.658 r_scbond_it 2.209 r_angle_other_deg 2.075 r_angle_refined_deg 1.777 r_mcangle_it 1.342 r_mcbond_it 0.694 r_xyhbond_nbd_refined 0.375 r_nbd_other 0.266 r_symmetry_vdw_refined 0.226
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.481 r_scangle_it 3.658 r_scbond_it 2.209 r_angle_other_deg 2.075 r_angle_refined_deg 1.777 r_mcangle_it 1.342 r_mcbond_it 0.694 r_xyhbond_nbd_refined 0.375 r_nbd_other 0.266 r_symmetry_vdw_refined 0.226 r_nbd_refined 0.224 r_symmetry_vdw_other 0.219 r_chiral_restr 0.121 r_nbtor_other 0.095 r_symmetry_hbond_refined 0.043 r_bond_refined_d 0.021 r_gen_planes_refined 0.005 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5273 Nucleic Acid Atoms Solvent Atoms 64 Heterogen Atoms 42
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SOLVE phasing REFMAC refinement