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Crystal Structure of A. Fulgidus Rio2 Serine Protein Kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other MAD, auto-sharp generated model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.85 293 PEG 900, sodium phosphate, sodium citrate, pH 3.85, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.59 52.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.588 α = 90 b = 44.452 β = 94.31 c = 62.603 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-21 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97942, 0.97931, 0.99998 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 99 0.049 23.07 3.8 21731 20608
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.05 98.1 0.117 9.13 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT Auto-sharp generated model 2 50 21731 20608 1123 98.93 0.17029 0.16795 0.1784 0.21173 0.2165 RANDOM 23.14
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.06 -0.01 0.05
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.051 r_dihedral_angle_1_deg 6.101 r_scbond_it 4.278 r_mcangle_it 2.717 r_angle_refined_deg 2.066 r_mcbond_it 1.544 r_angle_other_deg 1.064 r_symmetry_vdw_other 0.282 r_nbd_other 0.254 r_nbd_refined 0.233
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.051 r_dihedral_angle_1_deg 6.101 r_scbond_it 4.278 r_mcangle_it 2.717 r_angle_refined_deg 2.066 r_mcbond_it 1.544 r_angle_other_deg 1.064 r_symmetry_vdw_other 0.282 r_nbd_other 0.254 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.197 r_xyhbond_nbd_refined 0.193 r_symmetry_vdw_refined 0.181 r_chiral_restr 0.144 r_nbtor_other 0.092 r_bond_refined_d 0.023 r_gen_planes_other 0.018 r_gen_planes_refined 0.014 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2195 Nucleic Acid Atoms Solvent Atoms 198 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHARP phasing