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PRX D (type II) from Populus tremula
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 293 PEG4000, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.22 42.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.513 α = 90 b = 69.112 β = 93.3 c = 76.429 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2001-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON LURE BEAMLINE DW32 0.948 LURE DW32
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.62 29.88 96.14 79011 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.62 1.68 83.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.62 29.88 2 79011 68051 7560 96.14 0.19266 0.19266 0.18914 0.1995 0.22448 0.2329 RANDOM 19.466
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.51 -0.5 0.6
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.698 r_scangle_it 4.244 r_scbond_it 2.647 r_mcangle_it 1.819 r_angle_refined_deg 1.804 r_angle_other_deg 1.137 r_mcbond_it 1.084 r_symmetry_vdw_other 0.354 r_symmetry_vdw_refined 0.319 r_symmetry_hbond_refined 0.277
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.698 r_scangle_it 4.244 r_scbond_it 2.647 r_mcangle_it 1.819 r_angle_refined_deg 1.804 r_angle_other_deg 1.137 r_mcbond_it 1.084 r_symmetry_vdw_other 0.354 r_symmetry_vdw_refined 0.319 r_symmetry_hbond_refined 0.277 r_nbd_other 0.25 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.212 r_chiral_restr 0.116 r_nbtor_other 0.083 r_bond_other_d 0.032 r_gen_planes_other 0.03 r_bond_refined_d 0.02 r_gen_planes_refined 0.018
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4895 Nucleic Acid Atoms Solvent Atoms 622 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing