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Putative Phosphatase Ynic from Escherichia coli K12
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.2 298 Calcium Chloride PEG 3350 or PEGMME 3350, Sodium cacodylate, pH 6.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.07 40.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.591 α = 90 b = 88.447 β = 97.26 c = 48.591 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-2 mirrors 2004-02-18 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794, 0.9795, 0.956 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.76 25.16 96 0.087 6.9 5.9 39931 38493
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.76 1.83 71.2 0.28 3.95 4.3 2843
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.76 25.16 39931 33858 3770 97.81 0.1787 0.1787 0.17416 0.1843 0.21964 0.2318 RANDOM 17.716
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.61 -2.54 -2.14 0.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_dihedral_angle_4_deg 16.916 r_dihedral_angle_3_deg 13.797 r_dihedral_angle_1_deg 4.802 r_scangle_it 2.818 r_scbond_it 1.863 r_angle_refined_deg 1.3 r_mcangle_it 1.13 r_angle_other_deg 0.834 r_mcbond_it 0.787
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.025 r_dihedral_angle_4_deg 16.916 r_dihedral_angle_3_deg 13.797 r_dihedral_angle_1_deg 4.802 r_scangle_it 2.818 r_scbond_it 1.863 r_angle_refined_deg 1.3 r_mcangle_it 1.13 r_angle_other_deg 0.834 r_mcbond_it 0.787 r_nbd_refined 0.336 r_symmetry_vdw_refined 0.265 r_nbd_other 0.258 r_symmetry_vdw_other 0.231 r_symmetry_hbond_refined 0.223 r_xyhbond_nbd_refined 0.186 r_metal_ion_refined 0.176 r_mcbond_other 0.152 r_nbtor_other 0.084 r_chiral_restr 0.067 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3350 Nucleic Acid Atoms Solvent Atoms 637 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling SOLVE phasing