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Structural basis for the interactions between tenascins and the C-type lectin domains from lecticans: evidence for a cross-linking role for tenascins
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 294 8-12% PEG 8000, 150mM calcium acetate, 2-4% PEG MME 750, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.2 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 112.52 α = 90 b = 86.42 β = 90 c = 57.6 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH asymmetrically cut Si(111) 2003-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.097 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.57 39 97.3 0.072 7.2 8.7 18221 18210 66.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.57 2.71 91.7 0.198 3.4 6.1 2421
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIRAS THROUGHOUT 2.6 39 18221 16812 909 99.08 0.21 0.20995 0.20862 0.2122 0.23441 RANDOM 32.979
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.73 -2.41 0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.41 r_scangle_it 3.448 r_mcangle_it 3.001 r_scbond_it 2.179 r_mcbond_it 1.858 r_angle_refined_deg 1.296 r_angle_other_deg 0.813 r_symmetry_vdw_other 0.238 r_symmetry_hbond_refined 0.233 r_nbd_other 0.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.41 r_scangle_it 3.448 r_mcangle_it 3.001 r_scbond_it 2.179 r_mcbond_it 1.858 r_angle_refined_deg 1.296 r_angle_other_deg 0.813 r_symmetry_vdw_other 0.238 r_symmetry_hbond_refined 0.233 r_nbd_other 0.22 r_symmetry_vdw_refined 0.21 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.191 r_metal_ion_refined 0.158 r_nbtor_other 0.085 r_chiral_restr 0.084 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3140 Nucleic Acid Atoms Solvent Atoms 38 Heterogen Atoms 3
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing