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Crystal structure of VSHP_BPP21 in space group H3 with high resolution.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1TD3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 4.5 295 Na Acetate, PEG-MME 5000, MgCl2, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 295K, pH 4.50
Crystal Properties Matthews coefficient Solvent content 1.51 18.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 53.909 α = 90 b = 53.909 β = 90 c = 77.456 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9B NSLS X9B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 40 99.8 0.084 19.1 10.1 13405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.5 1.55 98.4 0.461 2.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R 1TD3 1.5 40 12731 669 94.8 0.1377 0.1261 0.1164 0.1958 0.1892 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 5 912.33
RMS Deviations Key Refinement Restraint Deviation s_non_zero_chiral_vol 0.054 s_similar_adp_cmpnt 0.054 s_zero_chiral_vol 0.046 s_angle_d 0.028 s_from_restr_planes 0.027 s_anti_bump_dis_restr 0.023 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.003 s_similar_dist s_approx_iso_adps
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 756 Nucleic Acid Atoms Solvent Atoms 167 Heterogen Atoms
Software Software Software Name Purpose SHELX model building SHELXL-97 refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing