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Catalytic Domain Of Human Phosphodiesterase 4B In Complex With AMP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 10 277 ammonium sulfate, lithium sulfate, pH 10, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.58 52.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.547 α = 90 b = 94.241 β = 90 c = 107.243 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD ADSC QUANTUM 210 2003-08-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.3.1 1.1 ALS 8.3.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 70.71 0.079 9.2 4.7 46988 46988
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.15 2.206 100 0.751 1.63 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.15 70.71 46988 46988 2505 98.91 0.23544 0.23362 0.2377 0.26822 0.2686 RANDOM 29.352
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.6 0.84 2.75
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.214 r_scangle_it 3.092 r_scbond_it 1.974 r_angle_refined_deg 1.502 r_mcangle_it 1.113 r_angle_other_deg 0.937 r_mcbond_it 0.606 r_symmetry_vdw_other 0.313 r_nbd_other 0.222 r_nbd_refined 0.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 3.214 r_scangle_it 3.092 r_scbond_it 1.974 r_angle_refined_deg 1.502 r_mcangle_it 1.113 r_angle_other_deg 0.937 r_mcbond_it 0.606 r_symmetry_vdw_other 0.313 r_nbd_other 0.222 r_nbd_refined 0.221 r_xyhbond_nbd_refined 0.178 r_symmetry_hbond_refined 0.177 r_symmetry_vdw_refined 0.143 r_metal_ion_refined 0.121 r_chiral_restr 0.096 r_nbtor_other 0.093 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.008 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5226 Nucleic Acid Atoms Solvent Atoms 69 Heterogen Atoms 50
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection ELVES data scaling EPMR phasing